37328 PriL_PriS_Eukaryotic
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37328 chr_14 PriL_PriS_Eukaryotic 752613 754450 + PriL_PriS_Eukaryotic

Synonyms

NCBI ID Ensembl Genomes exon ID
7441807 Thaps37328.1, Thaps37328.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0222
 0.32

Most Highly Correlated Transcripts

32661

ABC_ATPase superfamily
0.9192

20587

hypothetical protein
0.9131

261635

(pcna) PLN00057
0.9029

9238

hypothetical protein
0.8926

11958

Nuf2 superfamily
0.8924

30105

(FPS1) Trans_IPPS_HT
0.8896

28317

trimeric_dUTPase
0.8881

2376

PTZ00298
0.888

2442

hypothetical protein
0.8842

35387

(cdc2) PKc_like superfamily
0.8815

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PriL_PriS_Eukaryotic Eukaryotic core primase: Large subunit, PriL; Primases synthesize the RNA primers required for DNA... cl11970 520.667 0 83 - 512 specific 143474
PriL superfamily Archaeal/eukaryotic core primase: Large subunit, PriL; Primases synthesize the RNA primers required... - 520.667 0 83 - 512 superfamily 264494

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_46806 PHATR_46806 237916 149721 52656 Cre06.g293000.t1.1 AT1G67320.2 330433

KEGG

KEGG description KEGG Pathway
DNA replication map03030

GO Terms

GO:0003676 GO:0008152 GO:0016740 GO:0003896 GO:0005658 GO:0006269 GO:0003720 GO:0003724 GO:0004779 GO:0008192 GO:0008193 GO:0008723 GO:0008905 GO:0016779 GO:0017103 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016740

transferase activity

Details: 
Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO Category: 
MF

GO:0003896

DNA primase activity

Details: 
Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase.
GO Category: 
MF

GO:0005658

alpha DNA polymerase:primase complex

Details: 
A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis.
GO Category: 
CC

GO:0006269

DNA replication, synthesis of RNA primer

Details: 
The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis.
GO Category: 
BP

GO:0003720

telomerase activity

Details: 
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence.
GO Category: 
MF

GO:0003724

RNA helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a RNA helix.
GO Category: 
MF

GO:0004779

sulfate adenylyltransferase activity

Details: 
Catalysis of the transfer of an adenylyl group from an adenosine nucleotide (ATP or ADP) to sulfate, forming adenylylsulfate.
GO Category: 
MF

GO:0008192

RNA guanylyltransferase activity

Details: 
Catalysis of the posttranscriptional addition of a guanyl residue to the 5' end of an RNA molecule.
GO Category: 
MF

GO:0008193

tRNA guanylyltransferase activity

Details: 
Catalysis of the posttranscriptional addition of a guanyl residue to the 5' end of a tRNA molecule; observed for His tRNAs.
GO Category: 
MF

GO:0008723

NA

Details: 
NA
GO Category: 
NA

GO:0008905

mannose-phosphate guanylyltransferase activity

Details: 
Catalysis of the transfer of a phosphate group from GTP or GDP to a mannose molecule.
GO Category: 
MF

GO:0016779

nucleotidyltransferase activity

Details: 
Catalysis of the transfer of a nucleotidyl group to a reactant.
GO Category: 
MF

GO:0017103

UTP:galactose-1-phosphate uridylyltransferase activity

Details: 
Catalysis of the reaction: alpha-D-galactose 1-phosphate + UTP = diphosphate + UDP-D-galactose.
GO Category: 
MF

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