37442 Ribosomal_L7AeThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37442	chr_14	Ribosomal_L7Ae	403502	404029	+	Ribosomal_L7Ae

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452658	Thaps37442.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0273

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0096	0.39	0.00000031 0.00000074

Most Highly Correlated Transcripts

4372 hypothetical protein 0.8578	25359 hypothetical protein 0.8462	42412 RNAP_I_II_AC40 0.8421	269034 hypothetical protein 0.8302	1122 hypothetical protein 0.8289	5540 hypothetical protein 0.827
268816 (RPB5) PLN03111 0.8242	2890 hypothetical protein 0.8207	20866 hypothetical protein 0.8189	268443 SAICAR_synt_Sc 0.8175

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ribosomal_L7Ae		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa,...	cl00600	82.6278	7.78E-21	59 - 145	specific	250474
Ribosomal_L7Ae superfamily		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa,...	-	82.6278	7.78E-21	59 - 145	superfamily	260522

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_36743	PHATR_36743	212652	229113	455093	Cre16.g690500.t1.2	AT5G08180.2	496342

KEGG

KEGG description	KEGG Pathway
Ribosome biogenesis in eukaryotes	map03008

GO Terms

GO:0030529 GO:0042254 -

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