3793 2A0106
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3793 chr_3 2A0106 1809973 1811535 + 2A0106

Synonyms

NCBI ID Ensembl Genomes exon ID
7445335 Thaps3793.2, Thaps3793.1, Thaps3793.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0111

Most Highly Correlated Transcripts

4510

hypothetical protein
0.8833

13448

Sec1
0.8738

11695

hypothetical protein
0.8722

23473

Cupin_8 superfamily
0.8707

10975

hypothetical protein
0.8684

23407

ATP-grasp_4
0.8661

23148

PUB
0.8635

21546

hypothetical protein
0.8634

270222

0.8629

22573

2OG-FeII_Oxy_3 superfamily
0.8578

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 62.7165 4.13E-11 98 - 403 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 62.7165 4.13E-11 98 - 403 superfamily 119392
2A0106 metabolite-proton symporter; This model represents the metabolite:H+ symport subfamily of the major... - 149.344 1.43E-40 61 - 396 multi-dom 233168

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0005215 GO:0006810 GO:0016021 GO:0016020 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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