39225 Snf7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39225 chr_1 Snf7 2223347 2224382 - Snf7

Synonyms

NCBI ID Ensembl Genomes exon ID
7445540 Thaps39225.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0471

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0170
 0.34

Most Highly Correlated Transcripts

bd1877

(bd1877) NA
0.8801

bd1802

(bd1802) NA
0.8757

bd739

(bd739) NA
0.8725

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.8722

bd1890

(bd1890) NA
0.8491

7335

hypothetical protein
0.8405

24457

hypothetical protein
0.8374

bd824

(bd824) NA
0.8357

bd738

(bd738) NA
0.8332

24362

hypothetical protein
0.8261

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Snf7 Snf7; This family of proteins are involved in protein sorting and transport from the endosome to... cl19390 111.562 2.18E-30 17 - 181 specific 251895
Snf7 superfamily Snf7; This family of proteins are involved in protein sorting and transport from the endosome to... - 111.562 2.18E-30 17 - 181 superfamily 267743

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5904 PHATRDRAFT_5904 215114 234475 443471 Cre04.g213450.t1.2 AT2G06530.1 551841

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0005554 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

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