40831 Tryp_SPcThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40831	chr_5	Tryp_SPc	1917680	1919932	-	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444879	Thaps40831.1, Thaps40831.2, Thaps40831.4, Thaps40831.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0483

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0265	0.39	0.0021 16000

Most Highly Correlated Transcripts

bd1749 (bd1749) NA 0.8256	5909 (Tp_HSF_2.3c) HSF_DNA-bind superfamily 0.8139	bd740 (bd740) NA 0.8036	260939 DSPc 0.792	20596 hypothetical protein 0.7899	bd1803 (bd1803) NA 0.7863
21548 hypothetical protein 0.7817	bd1822 (bd1822) SCP superfamily 0.7745	23686 Sun 0.7685	bd739 (bd739) NA 0.7547

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	238.33	3.25E-77	34 - 268	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	238.33	3.25E-77	34 - 268	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	235.265	5.73E-76	33 - 265	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	211261	238496	Not available	Not available	257123

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 -

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