PHATRDRAFT_10024 heterogeneous nuclear ribonucleoprotein h3 (RRM_hnRNPH_ESRPs_RBM12_like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_10024 chr_2 heterogeneous nuclear ribonucleoprotein h3 (RRM_hnRNPH_ESRPs_RBM12_like) 589171 590172 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0412

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0148
 0.35

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_hnRNPH_ESRPs_RBM12_like RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family,... cl17169 67.1971 5.18E-15 4 - 67 specific 240700
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 67.1971 5.18E-15 4 - 67 superfamily 266524
RRM_hnRNPH_ESRPs_RBM12_like RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family,... cl17169 67.1971 5.18E-15 4 - 67 specific 240700
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 67.1971 5.18E-15 4 - 67 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 47.249 1.08E-06 157 - 245 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
5686 Not available 274197 253653 251043 Cre14.g628100.t1.2 AT3G20890.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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