PHATRDRAFT_10102 (RRM_CNOT4)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_10102 chr_2 (RRM_CNOT4) 480675 481529 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0411

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0156
 0.31

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_CNOT4 RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar... cl17169 149.226 8.31E-46 84 - 188 specific 240884
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 149.226 8.31E-46 84 - 188 superfamily 266524
zf-RING_4 RING/Ubox like zinc-binding domain; RING/Ubox like zinc-binding domain. cl17238 93.8375 3.71E-25 4 - 50 specific 258708
RING superfamily RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... - 93.8375 3.71E-25 4 - 50 superfamily 266579

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
17845 Not available 142727 297855 234154 Cre01.g040500.t1.2 AT3G45630.1 331074

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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