PHATRDRAFT_10122 rna binding motif protein 22 (RRM_SF superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_10122 chr_2 rna binding motif protein 22 (RRM_SF superfamily) 1046252 1047223 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0408

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0251
 0.21

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 72.2924 2.08E-16 239 - 313 superfamily 266524
ZnF_C3H1 zinc finger; zinc finger. cl11592 39.5349 7.65E-05 159 - 183 specific 214632
zf-CCCH superfamily Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar). - 39.5349 7.65E-05 159 - 183 superfamily 264437
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 55.7234 3.93E-09 237 - 318 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
34293 Not available 160233 158646 462082 Cre02.g075650.t1.2 AT1G07360.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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