PHATRDRAFT_10835 translation initiation factor if-2 (IF-2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_10835 chr_4 translation initiation factor if-2 (IF-2) 668070 669926 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0209

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0200
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF2_eIF5B Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; IF2/eIF5B contribute to... cl17170 268.571 1.19E-86 82 - 244 specific 206674
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 268.571 1.19E-86 82 - 244 superfamily 266525
IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic... cl02787 136.075 2.85E-38 255 - 350 specific 239673
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 100.253 2.27E-25 493 - 576 superfamily 261449
mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation... cl02787 100.253 2.27E-25 493 - 576 specific 239663
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 100.253 2.27E-25 493 - 576 superfamily 261449
IF-2 superfamily Translation-initiation factor 2; IF-2 is a translation initiator in each of the three main... - 89.0431 4.60E-21 372 - 476 superfamily 256778
IF-2 superfamily Translation-initiation factor 2; IF-2 is a translation initiator in each of the three main... - 89.0431 4.60E-21 372 - 476 superfamily 256778
IF2_N superfamily Translation initiation factor IF-2, N-terminal region; This conserved feature at the N-terminus of... - 39.3643 0.000204435 5 - 54 superfamily 252785
IF2_N superfamily Translation initiation factor IF-2, N-terminal region; This conserved feature at the N-terminus of... - 39.3643 0.000204435 5 - 54 superfamily 252785

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
29049 Not available 266952 294531 419681 Cre07.g341850.t1.2 AT1G17220.1 317138

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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