PHATRDRAFT_11099 guanosine-3-bis3-pyrophosphohydrolase (ppgpp synthase) (SpoT)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_11099 chr_4 guanosine-3-bis3-pyrophosphohydrolase (ppgpp synthase) (SpoT) 1151650 1153258 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0312

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0139
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; This... cl11966 102.425 6.87E-26 209 - 355 specific 143389
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 102.425 6.87E-26 209 - 355 superfamily 264491
TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a... cl15768 92.1873 6.20E-23 410 - 469 specific 133438
TGS superfamily The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is... - 92.1873 6.20E-23 410 - 469 superfamily 265779
HDc Metal dependent phosphohydrolases with conserved 'HD' motif cl17215 45.7933 2.62E-06 35 - 161 specific 238032
HDc superfamily Metal dependent phosphohydrolases with conserved 'HD' motif - 45.7933 2.62E-06 35 - 161 superfamily 266561
DUF4197 superfamily Protein of unknown function (DUF4197); This family of proteins is functionally uncharacterized.... - 36.7708 0.00698857 463 - 507 superfamily 206023
SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms /... - 541.841 0 4 - 511 multi-dom 223394

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33039 Not available 201593 195742 457699 Cre03.g159800.t1.1 AT4G02260.3 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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