PHATRDRAFT_11235 pentapeptide repeat
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_11235 chr_5 pentapeptide repeat 630730 631059 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0339

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0080
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pentapeptide superfamily Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The... - 40.0595 2.90E-06 10 - 49 superfamily 109845
Pentapeptide superfamily Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The... - 40.0595 2.90E-06 10 - 49 superfamily 109845
Pentapeptide_4 Pentapeptide repeats (9 copies); Pentapeptide repeats (9 copies). - 36.9006 6.57E-05 3 - 77 multi-dom 257914

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
25140 Not available 144511 210246 425734 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments