PHATRDRAFT_11308 sjchgc05278 protein (RRM_PPIE)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_11308	chr_5	sjchgc05278 protein (RRM_PPIE)	495280	495643	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0307

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0150	0.31	0.0000036 12000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_PPIE		RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins; This subfamily corresponds to...	cl17169	122.331	1.34E-37	8 - 80	specific	240793
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	122.331	1.34E-37	8 - 80	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	77.2946	1.27E-18	3 - 86	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
31121		Not available	271581	304740	458033	Cre06.g288750.t1.2	AT1G13690.1	470319

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments