PHATRDRAFT_12779 dna-directed rna polymerases i and iii 16 kda polypeptide (RNAP_I_III_AC19)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_12779	chr_9	dna-directed rna polymerases i and iii 16 kda polypeptide (RNAP_I_III_AC19)	89837	90103	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0209

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0215	0.22	2500 130000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNAP_I_III_AC19		AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III; The eukaryotic AC19 subunit of RNA...	cl11409	103.466	4.58E-30	1 - 83	specific	132907
RNAP_RPB11_RPB3 superfamily		RPB11 and RPB3 subunits of RNA polymerase; The eukaryotic RPB11 and RPB3 subunits of RNA polymerase...	-	103.466	4.58E-30	1 - 83	superfamily	264356
RNA_pol_L		RNA polymerase Rpb3/Rpb11 dimerization domain; The two eukaryotic subunits Rpb3 and Rpb11 dimerise...	-	32.5733	0.00602387	9 - 44	multi-dom	250432

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
263565		Not available	174798	150745	194396	Cre12.g484100.t1.2	Not available	361522

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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