PHATRDRAFT_12902 nitrite reductase (nirA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_12902 chr_9 nitrite reductase (nirA) 733205 734937 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0218

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0124
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the... cl19102 125.442 6.04E-34 137 - 298 specific 250346
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 54.1803 6.48E-09 410 - 497 superfamily 267455
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 68.3064 2.36E-14 64 - 122 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 68.3064 2.36E-14 64 - 122 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 68.3064 2.36E-14 64 - 122 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 68.3064 2.36E-14 64 - 122 superfamily 251971
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 54.1803 6.48E-09 410 - 497 superfamily 267455
nirA ferredoxin-nitrite reductase; Reviewed - 565.788 0 3 - 535 multi-dom 236572

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
262125 Not available 254246 204738 428968 Cre09.g410750.t1.2 AT2G15620.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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