PHATRDRAFT_12981 pre-mrna splicing factor rna helicase (DEXDc superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_12981 chr_10 pre-mrna splicing factor rna helicase (DEXDc superfamily) 424293 425681 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0030

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 130.821 2.90E-36 288 - 419 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 130.821 2.90E-36 288 - 419 superfamily 238034
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 210.034 5.34E-65 45 - 276 superfamily 266587
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 142.631 1.15E-39 59 - 291 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
13335 Not available 184428 234497 453778 Cre13.g592150.t1.2 AT2G33730.1 361512

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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