PHATRDRAFT_13326 dna-directed rna polymerases iia (Zn-ribbon_RPC11)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_13326	chr_11	dna-directed rna polymerases iia (Zn-ribbon_RPC11)	769555	769890	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0231

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0214	0.23	0.00000000001 0.00000000023

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Zn-ribbon_RPC11		C-terminal zinc ribbon domain of RPC11 subunit of RNA polymerase III; The C-terminal zinc ribbon...	cl02609	94.5746	1.12E-26	65 - 110	specific	259794
Zn-ribbon superfamily		C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit; The...	-	94.5746	1.12E-26	65 - 110	superfamily	261369
RPB9		DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]	-	87.1263	5.00E-23	1 - 110	multi-dom	224510

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
37100		Not available	187317	305657	63678	Cre02.g102400.t1.2	AT1G01210.1	491179

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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