PHATRDRAFT_13835 ylm1_schpo tpr repeat-containing protein (TPR)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_13835	chr_12	ylm1_schpo tpr repeat-containing protein (TPR)	17226	18332	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0202

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0128	0.39	88 190

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	68.9459	1.09E-14	212 - 310	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	68.9459	1.09E-14	212 - 310	superfamily	238112
TPR_11		TPR repeat; TPR repeat.	-	44.2267	3.34E-06	246 - 308	multi-dom	257739
TPR_11		TPR repeat; TPR repeat.	-	44.2267	3.34E-06	246 - 308	multi-dom	257739

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
32374		Not available	149628	202479	234946	Cre09.g401700.t1.2	AT5G17270.1	351623

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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