PHATRDRAFT_14103 rag c (RagC_like)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_14103	chr_13	rag c (RagC_like)	635342	636589	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0376

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0183	0.27	2.9 4.4

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RagC_like		Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and D;...	cl17170	256.765	1.66E-85	1 - 177	specific	206745
Ras_like_GTPase superfamily		Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase...	-	256.765	1.66E-85	1 - 177	superfamily	266525
Gtr1_RagA		Gtr1/RagA G protein conserved region; GTR1 was first identified in S. cerevisiae as a suppressor of...	-	229.022	5.15E-74	1 - 229	multi-dom	252733

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
28523		Not available	180670	238794	445701	Not available	Not available	552896

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments