PHATRDRAFT_14856 ribosomal large subunit pseudouridylate synthase (RsuA)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_14856	chr_16	ribosomal large subunit pseudouridylate synthase (RsuA)	530589	531176	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0245

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0054	0.38	630 2100

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	122.628	1.38E-35	1 - 125	superfamily	260207
RsuA		16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation,...	-	142.381	2.58E-42	2 - 125	multi-dom	224108

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
1150		Not available	187146	310109	45202	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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