PHATRDRAFT_15730 sphingosine-1-phosphate lyase (GadB)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_15730	chr_21	sphingosine-1-phosphate lyase (GadB)	316869	318197	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0339

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0032	0.44	0.0000001 110000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GadB		Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]	cl18945	244.974	2.21E-75	7 - 387	specific	223154
AAT_I superfamily		Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent...	-	244.974	2.21E-75	7 - 387	superfamily	267298

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
29322		Not available	157950	263672	102422	Cre03.g155051.t1.1	AT1G27980.1	346729

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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