PHATRDRAFT_16932 (FTase)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_16932	chr_29	(FTase)	325931	327235	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0392

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0171	0.38	4.9 9300

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
FTase		Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase)...	cl08267	362.323	4.24E-124	15 - 313	specific	239223
ISOPREN_C2_like superfamily		This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly...	-	362.323	4.24E-124	15 - 313	superfamily	263556
PLN03201		RAB geranylgeranyl transferase beta-subunit; Provisional	-	147.922	3.59E-41	13 - 348	multi-dom	215630

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
264607		Not available	139631	172461	61152	Cre14.g612500.t1.2	AT5G40280.1	350539

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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