PHATRDRAFT_17324 ribosomal proteinx-linked (PLN00036)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_17324 chr_1 ribosomal proteinx-linked (PLN00036) 606451 607432 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0146

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0228
 0.14

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KOW_RPS4 KOW motif of Ribosomal Protein S4 (RPS4); RPS4 plays a critical role in the core assembly of the... cl00354 91.8083 5.82E-24 175 - 229 specific 240511
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 91.8083 5.82E-24 175 - 229 superfamily 260377
S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... cl09940 37.6142 0.000360462 51 - 112 specific 238095
S4 superfamily S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... - 37.6142 0.000360462 51 - 112 superfamily 263930
Ribosomal_S4e superfamily Ribosomal family S4e; Ribosomal family S4e. - 112.59 2.15E-31 94 - 168 superfamily 189761
Ribosomal_S4e superfamily Ribosomal family S4e; Ribosomal family S4e. - 112.59 2.15E-31 94 - 168 superfamily 189761
RS4NT superfamily RS4NT (NUC023) domain; This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is... - 70.7536 1.59E-16 3 - 40 superfamily 254610
RS4NT superfamily RS4NT (NUC023) domain; This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is... - 70.7536 1.59E-16 3 - 40 superfamily 254610
PLN00036 40S ribosomal protein S4; Provisional - 453.787 2.94E-162 1 - 249 multi-dom 177670

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
27292 Not available 276274 317633 55884 Cre06.g308250.t1.2 AT5G58420.1 356144

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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