PHATRDRAFT_18199 dead box rna (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_18199 chr_2 dead box rna (DEADc) 755565 757592 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0383

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0243
 0.22

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 247.398 6.88E-78 1 - 176 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 247.398 6.88E-78 1 - 176 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 130.821 6.41E-36 190 - 319 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 130.821 6.41E-36 190 - 319 superfamily 238034

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40929 Not available 209768 319455 Not available Cre16.g676400.t1.2 AT1G20920.2 533185

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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