PHATRDRAFT_19982 (PRP8)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_19982 chr_7 (PRP8) 441122 448252 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0208

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_H_like_Prp8_IV Ribonuclease-like Prp8 domain IV core; This family contains Prp8 domain IV, which adopts a RNase H... cl14782 558.501 0 1767 - 2017 specific 260013
RNase_H_like superfamily Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of... - 558.501 0 1767 - 2017 superfamily 265450
MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8;... cl13996 432.051 9.28E-138 2068 - 2328 specific 163687
MPN superfamily Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains... - 432.051 9.28E-138 2068 - 2328 superfamily 265414
PROCN superfamily PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8... - 744.63 0 381 - 791 superfamily 116688
PROCN superfamily PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8... - 744.63 0 381 - 791 superfamily 116688
U6-snRNA_bdg superfamily U6-snRNA interacting domain of PrP8; This domain incorporates the interacting site for the U6-snRNA... - 342.143 1.28E-107 1443 - 1602 superfamily 256080
U6-snRNA_bdg superfamily U6-snRNA interacting domain of PrP8; This domain incorporates the interacting site for the U6-snRNA... - 342.143 1.28E-107 1443 - 1602 superfamily 256080
PRO8NT superfamily PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA... - 287.677 1.47E-88 19 - 171 superfamily 149261
PRO8NT superfamily PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA... - 287.677 1.47E-88 19 - 171 superfamily 149261

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
6656 Not available 276309 319191 450596 Cre01.g016050.t1.2 AT4G38780.1 541614

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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