PHATRDRAFT_20434 at1g64520 f1n19_10 (SAC3_GANP)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_20434	chr_9	at1g64520 f1n19_10 (SAC3_GANP)	150037	150783	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0183

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0125	0.29	3.9 3700

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PCI_Csn8 superfamily		COP9 signalosome, subunit CSN8; This PCI_Csn8 domain is conserved from plants to humans. It is a...	-	90.7951	1.20E-22	86 - 224	superfamily	255736
PCI_Csn8 superfamily		COP9 signalosome, subunit CSN8; This PCI_Csn8 domain is conserved from plants to humans. It is a...	-	90.7951	1.20E-22	86 - 224	superfamily	255736
SAC3_GANP		SAC3/GANP/Nin1/mts3/eIF-3 p25 family; This large family includes diverse proteins involved in large...	-	110.086	2.96E-29	51 - 189	multi-dom	251923

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
260899		Not available	213363	225386	449934	Cre17.g708300.t1.2	AT1G64520.1	362255

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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