PHATRDRAFT_2097 atp-dependent rna helicase ded1 (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_2097 chr_9 atp-dependent rna helicase ded1 (DEADc) 2515 4257 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0237

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0192
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 283.221 3.54E-92 129 - 339 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 283.221 3.54E-92 129 - 339 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 149.31 1.27E-42 349 - 478 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 149.31 1.27E-42 349 - 478 superfamily 238034
PTZ00424 helicase 45; Provisional - 210.838 5.86E-62 110 - 502 multi-dom 185609

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
649 Not available 277796 245246 230649 Cre10.g427700.t1.2 AT3G58510.3 323195

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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