PHATRDRAFT_21513 trna synthetase class i (valS)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_21513 chr_13 trna synthetase class i (valS) 255248 258421 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0069

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ValRS_core catalytic core domain of valyl-tRNA synthetases; Valine amino-acyl tRNA synthetase (ValRS)... cl00015 541.452 0 146 - 685 specific 185677
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 541.452 0 146 - 685 superfamily 260139
Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases; This domain is found in valyl tRNA synthetases... cl12020 183.527 2.21E-53 685 - 837 specific 153416
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 183.527 2.21E-53 685 - 837 superfamily 264512
Val_tRNA-synt_C superfamily Valyl tRNA synthetase tRNA binding arm; This domain is found at the C-terminus of Valyl tRNA... - 91.1717 1.07E-21 969 - 1033 superfamily 151031
Val_tRNA-synt_C superfamily Valyl tRNA synthetase tRNA binding arm; This domain is found at the C-terminus of Valyl tRNA... - 91.1717 1.07E-21 969 - 1033 superfamily 151031
tRNA-synt_1_2 superfamily Leucyl-tRNA synthetase, Domain 2; This is a family of the conserved region of Leucine-tRNA ligase... - 68.2751 5.88E-13 310 - 424 superfamily 257918
valS valyl-tRNA synthetase; Reviewed - 1334.36 0 106 - 1035 multi-dom 235582

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
42971 Not available 211989 238673 65763 Cre07.g350500.t1.2 Not available 314768

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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