PHATRDRAFT_21929 (Coatomer_WDAD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_21929 chr_15 (Coatomer_WDAD) 111417 115412 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0196

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0210
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 257.263 3.56E-77 5 - 327 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 257.263 3.56E-77 5 - 327 superfamily 238121
COPI_C superfamily Coatomer (COPI) alpha subunit C-terminus; This family represents the C-terminus (approximately 500... - 237.077 3.28E-68 931 - 1267 superfamily 253989
Coatomer_WDAD Coatomer WD associated region; This region is composed of WD40 repeats. - 401.585 2.07E-127 364 - 807 multi-dom 252340
COG2319 FOG: WD40 repeat [General function prediction only] - 157.558 1.10E-40 2 - 344 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
34876 Not available 243116 64445 419523 Cre13.g565850.t1.1 AT2G21390.1 545018

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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