PHATRDRAFT_23748 small subunit ribosomal protein 28 (S1_S28E)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_23748	chr_26	small subunit ribosomal protein 28 (S1_S28E)	395961	396395	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0146

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0228	0.14	760 130000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_S28E		S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety...	cl09927	89.6167	3.49E-25	6 - 67	specific	239904
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	89.6167	3.49E-25	6 - 67	superfamily	263921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
38925		Not available	204141	179483	74335	Cre12.g510450.t1.2	AT5G03850.1	284079

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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