PHATRDRAFT_25932 acyl-coenzyme ac-2 to c-3 short chain (SCAD_SBCAD)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_25932	chr_3	acyl-coenzyme ac-2 to c-3 short chain (SCAD_SBCAD)	1342135	1343712	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0108

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0177	0.30	0.0000001 630

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SCAD_SBCAD		Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases;...	cl09933	584.616	0	51 - 430	specific	173847
ACAD superfamily		Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA...	-	584.616	0	51 - 430	superfamily	263927
CaiA		Acyl-CoA dehydrogenases [Lipid metabolism]	-	371.835	2.51E-125	49 - 433	multi-dom	224871

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
35710		Not available	209571	294406	437926	Cre06.g296400.t1.2	Not available	489469

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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