PHATRDRAFT_26293 chloroplast photosystem ii 12 kda extrinsic protein (PsbU)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_26293	chr_4	chloroplast photosystem ii 12 kda extrinsic protein (PsbU)	1114405	1115278	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0111

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0217	0.19	2.1e-17 20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PsbU		Photosystem II 12 kDa extrinsic protein (PsbU); This family consists of several photosystem II 12...	cl19066	140.127	2.81E-43	55 - 147	specific	203470
ENDO3c superfamily		endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase...	-	140.127	2.81E-43	55 - 147	superfamily	267419

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
2848		Not available	268077	312831	419966	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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