PHATRDRAFT_27709 phenylalanine-trna synthetase-beta subunit (PLN02265)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_27709 chr_9 phenylalanine-trna synthetase-beta subunit (PLN02265) 624496 626418 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0140

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0098
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-... cl00268 144.323 1.04E-39 409 - 639 specific 238392
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 144.323 1.04E-39 409 - 639 superfamily 260313
B5 tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. cl08394 66.7497 1.25E-13 327 - 391 specific 197942
B5 superfamily tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. - 66.7497 1.25E-13 327 - 391 superfamily 263627
B3_4 B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA... cl19243 68.825 1.60E-13 126 - 291 specific 214876
B3_4 superfamily B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA... - 68.825 1.60E-13 126 - 291 superfamily 267596
PLN02265 probable phenylalanyl-tRNA synthetase beta chain - 1011.91 0 1 - 640 multi-dom 215149

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33046 Not available 273892 21296 441352 Cre13.g603900.t1.2 AT1G72550.1 545525

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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