PHATRDRAFT_28568 snf2 domain-containing protein helicase domain-containing protein ring finger domain-containing protein (SNF2_N)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_28568 chr_12 snf2 domain-containing protein helicase domain-containing protein ring finger domain-containing... 827225 830217 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0233

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0179
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 88.834 1.58E-20 527 - 653 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 88.834 1.58E-20 527 - 653 superfamily 238034
RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... cl17238 40.5068 0.000106531 443 - 490 specific 238093
RING superfamily RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... - 40.5068 0.000106531 443 - 490 superfamily 266579
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 38.0872 0.00173978 49 - 112 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 38.0872 0.00173978 49 - 112 superfamily 266587
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 38.0872 0.00173978 49 - 112 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 38.0872 0.00173978 49 - 112 superfamily 266587
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 161.686 9.26E-45 1 - 419 multi-dom 249654

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268889 Not available 209064 186386 467421 Cre11.g479300.t1.1 AT1G05120.1 566639

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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