PHATRDRAFT_30898 vacuolar protein sorting-associated protein vps4 (AAA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_30898 chr_27 vacuolar protein sorting-associated protein vps4 (AAA) 49459 50952 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0386

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 98.3723 1.59E-24 127 - 291 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 98.3723 1.59E-24 127 - 291 superfamily 267297
MIT superfamily MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is... - 81.5424 3.59E-19 8 - 76 superfamily 260336
Vps4_C superfamily Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins... - 60.3469 8.34E-12 374 - 425 superfamily 204202
AAA ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety... - 84.7325 1.38E-19 156 - 293 multi-dom 214640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
821 Not available 261371 24016 Not available Cre02.g079300.t1.2 AT2G27600.1 491946

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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