PHATRDRAFT_35063 snrnp protein (Sm_B)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_35063	chr_6	snrnp protein (Sm_B)	988720	989399	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0112

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0229	0.31	0.000005 1600

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sm_B		Sm protein B; The eukaryotic Sm proteins (B/B', D1, D2, D3, E, F and G) assemble into a...	cl00259	139.608	6.07E-43	5 - 85	specific	212464
Sm_like superfamily		Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form...	-	139.608	6.07E-43	5 - 85	superfamily	260307

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
31859		Not available	215974	152083	121403	Cre14.g611150.t1.2	AT5G44500.2	304932

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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