PHATRDRAFT_35556 (TPR_MLP1_2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_35556 chr_8 (TPR_MLP1_2) 215786 221848 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0030

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0090
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nucleoporin_FG superfamily Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in... - 48.9675 9.80E-07 1725 - 1832 superfamily 257944
Nucleoporin_FG superfamily Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in... - 48.9675 9.80E-07 1725 - 1832 superfamily 257944
TPR_MLP1_2 TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human... - 64.2395 1.45E-11 975 - 1105 multi-dom 254520
Cast RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of... - 39.6046 0.00768749 41 - 792 multi-dom 255805

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
25687 Not available Not available 180661 Not available Not available AT1G79280.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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