PHATRDRAFT_37131 at3g11830 f26k24_12 (TCP1_eta)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_37131	chr_12	at3g11830 f26k24_12 (TCP1_eta)	231085	232951	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0144

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0246	0.27	47 14

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TCP1_eta		TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in...	cl02777	913.211	0	5 - 526	specific	239456
chaperonin_like superfamily		chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share...	-	913.211	0	5 - 526	superfamily	261443
groEL		chaperonin GroEL; Reviewed	-	80.9179	2.24E-16	30 - 531	multi-dom	237231

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
13653		Not available	265760	247534	454161	Cre01.g026550.t1.1	AT3G11830.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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