PHATRDRAFT_40521 vesicle transport v-snare (vesicle soluble nsf attachment protein receptor) (V-SNARE)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_40521	chr_24	vesicle transport v-snare (vesicle soluble nsf attachment protein receptor) (V-SNARE)	143502	144113	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0369

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0171	0.38	4.9 9300

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
V-SNARE superfamily		Vesicle transport v-SNARE protein N-terminus; V-SNARE proteins are required for protein traffic...	-	52.9944	4.23E-10	15 - 85	superfamily	252942
V-SNARE superfamily		Vesicle transport v-SNARE protein N-terminus; V-SNARE proteins are required for protein traffic...	-	52.9944	4.23E-10	15 - 85	superfamily	252942
V-SNARE_C superfamily		Snare region anchored in the vesicle membrane C-terminus; Within the SNARE proteins interactions in...	-	39.5033	4.51E-05	120 - 176	superfamily	152787

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
264899		Not available	192443	284297	Not available	Not available	AT1G26670.1	295979

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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