PHATRDRAFT_41857 abc transporter (PRK11819)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_41857 chr_4 abc transporter (PRK11819) 1231010 1232650 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0329

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0053
 0.47

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 158.766 6.87E-46 315 - 509 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 158.766 6.87E-46 315 - 509 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 158.766 6.87E-46 315 - 509 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 158.766 6.87E-46 315 - 509 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 46.4164 1.24E-06 220 - 295 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 46.4164 1.24E-06 220 - 295 superfamily 257346
PRK11819 putative ABC transporter ATP-binding protein; Reviewed - 936.847 0 7 - 543 multi-dom 236992

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
21858 Not available 228190 247149 453665 Cre07.g335400.t1.1 Not available 347456

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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