PHATRDRAFT_42840 secis binding protein 2 (Ribosomal_L7Ae)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42840 chr_1 secis binding protein 2 (Ribosomal_L7Ae) 1284055 1286311 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0047

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0090
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa,... cl00600 61.827 1.38E-11 630 - 715 specific 250474
Ribosomal_L7Ae superfamily Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa,... - 61.827 1.38E-11 630 - 715 superfamily 260522
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 37.5355 0.00155642 463 - 544 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 37.5355 0.00155642 463 - 544 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269705 Not available 185147 179750 Not available Not available Not available 483329

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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