PHATRDRAFT_42902 (COG0523)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42902 chr_1 (COG0523) 1470231 1474979 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0340

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0071
 0.39

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
cobW CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression... cl17203 147.001 1.01E-39 743 - 985 specific 251330
Fer4_NifH superfamily The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain.... - 147.001 1.01E-39 743 - 985 superfamily 266552
CobW_C Cobalamin synthesis protein cobW C-terminal domain; CobW proteins are generally found proximal to... cl08458 82.645 2.20E-18 1156 - 1309 specific 214844
CobW_C superfamily Cobalamin synthesis protein cobW C-terminal domain; This is a large and diverse family of putative... - 82.645 2.20E-18 1156 - 1309 superfamily 263667
POP1 superfamily Ribonucleases P/MRP protein subunit POP1; This family represents a conserved region approximately... - 80.4282 5.46E-17 68 - 215 superfamily 254000
POP1 superfamily Ribonucleases P/MRP protein subunit POP1; This family represents a conserved region approximately... - 80.4282 5.46E-17 68 - 215 superfamily 254000
POPLD superfamily POPLD (NUC188) domain; This domain is found in POP1-like nucleolar proteins. - 43.4284 4.31E-05 410 - 471 superfamily 254643
DUF4507 superfamily Domain of unknown function (DUF4507); This family of proteins is found in eukaryotes. Proteins in... - 40.8097 0.00194569 222 - 322 superfamily 259101
COG0523 Putative GTPases (G3E family) [General function prediction only] - 190.969 3.62E-53 742 - 1032 multi-dom 223597

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
35401 Not available 246183 210539 443176 Cre14.g613200.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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