PHATRDRAFT_43105 pde318 (pigment defective 318) gtp binding (COG1084)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_43105	chr_1	pde318 (pigment defective 318) gtp binding (COG1084)	2050351	2051718	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0004

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0004	0.65	290000 320000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ras_like_GTPase superfamily		Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase...	-	159.648	2.01E-46	235 - 436	superfamily	266525
COG1084		Predicted GTPase [General function prediction only]	-	182.888	6.35E-53	62 - 435	multi-dom	224009

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
21050		Not available	196214	325692	458246	Not available	AT1G80770.1	312474

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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