PHATRDRAFT_43406 dna helicase (DEXDc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43406 chr_2 dna helicase (DEXDc) 363062 366848 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0131

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0138
 0.26

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 76.6072 8.04E-16 50 - 191 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 76.6072 8.04E-16 50 - 191 superfamily 266587
DSHCT superfamily DSHCT (NUC185) domain; This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. - 81.1081 3.92E-17 1011 - 1179 superfamily 254631
HELICc helicase superfamily c-terminal domain; helicase superfamily c-terminal domain. cl17351 48.7473 5.94E-07 530 - 599 specific 197757
Helicase_C superfamily Helicase conserved C-terminal domain; The Prosite family is restricted to DEAD/H helicases, whereas... - 48.7473 5.94E-07 530 - 599 superfamily 266641
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 92.1698 1.13E-20 26 - 219 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
262824 Not available 195141 263316 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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