PHATRDRAFT_44151 skp1 family (Skp1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_44151 chr_3 skp1 family (Skp1) 1127076 1127878 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0216
 0.38

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Skp1 superfamily Skp1 family, dimerization domain; Skp1 family, dimerization domain. - 72.5844 3.49E-17 97 - 173 superfamily 250639
Skp1 superfamily Skp1 family, dimerization domain; Skp1 family, dimerization domain. - 72.5844 3.49E-17 97 - 173 superfamily 250639
Skp1_POZ superfamily Skp1 family, tetramerization domain; Skp1 family, tetramerization domain. - 59.9997 2.00E-12 6 - 124 superfamily 266799
SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] - 68.8172 3.66E-15 6 - 171 multi-dom 227528

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
261689 Not available 271074 197157 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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