PHATRDRAFT_44397 sam domain and hd1 (COG1078)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_44397 chr_4 sam domain and hd1 (COG1078) 423506 425560 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0100

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0168
 0.27

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HDc Metal dependent phosphohydrolases with conserved 'HD' motif cl17215 55.0381 4.70E-09 87 - 142 specific 238032
HDc superfamily Metal dependent phosphohydrolases with conserved 'HD' motif - 55.0381 4.70E-09 87 - 142 superfamily 266561
Cas3''_I superfamily CRISPR/Cas system-associated protein Cas3''; CRISPR (Clustered Regularly... - 47.152 2.35E-06 91 - 197 superfamily 266734
COG1078 HD superfamily phosphohydrolases [General function prediction only] - 139.444 6.74E-36 45 - 466 multi-dom 224004

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
8386 Not available 136746 256829 452340 Cre03.g191500.t1.1 AT5G40290.1 307745

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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