PHATRDRAFT_44442 nuclear localization sequence binding protein nsr1p (RRM)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_44442 chr_4 nuclear localization sequence binding protein nsr1p (RRM) 571241 572050 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0202

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0234
 0.45

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... cl17169 65.4041 3.50E-14 66 - 139 specific 240668
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 72.2411 1.08E-16 164 - 238 superfamily 266524
RRM RNA recognition motif; RNA recognition motif. cl17169 72.2411 1.08E-16 164 - 238 specific 214636
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 72.2411 1.08E-16 164 - 238 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
1374 Not available 193970 307417 Not available Not available AT3G55340.1 501188

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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