PHATRDRAFT_48809 Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_48809	chr_19		309778	311526	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0120

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0218	0.32	7600 56000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
VIT1		VIT family; This family includes the vacuolar Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar...	cl00278	39.98	0.000626424	355 - 484	specific	251019
CCC1_like superfamily		CCC1-related family of proteins; CCC1_like: This protein family includes the proteins related to...	-	39.98	0.000626424	355 - 484	superfamily	260320

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
5671		Not available	181533	307134	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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