PHATRDRAFT_49767 (ZnF_UBR1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_49767	chr_24	(ZnF_UBR1)	218755	227119	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0314

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0072	0.33	11 13000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ZnF_UBR1		Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway; Domain is...	cl19744	65.9252	1.73E-12	1949 - 2015	specific	197698
zf-UBR superfamily		Putative zinc finger in N-recognin (UBR box); This region is found in E3 ubiquitin ligases that...	-	65.9252	1.73E-12	1949 - 2015	superfamily	268097

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
23587		Not available	263505	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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