PHATRDRAFT_50218 (Adenylation_DNA_ligase_like superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_50218 chr_28 (Adenylation_DNA_ligase_like superfamily) 18412 22405 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0336

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Adenylation_DNA_ligase_like superfamily Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases; ATP-dependent... - 167.756 2.36E-46 354 - 723 superfamily 264509
OBF_DNA_ligase_family superfamily The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part... - 89.5414 2.85E-20 729 - 887 superfamily 263645
DNA_ligase_A_N superfamily DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (... - 83.0465 9.75E-18 119 - 301 superfamily 252736
DNA_ligase_A_N superfamily DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (... - 83.0465 9.75E-18 119 - 301 superfamily 252736
dnl1 DNA ligase I, ATP-dependent (dnl1); All proteins in this family with known functions are ATP-... - 172.885 2.07E-45 144 - 899 multi-dom 233029

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
264761 Not available Not available 322119 Not available Not available Not available 284249

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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