PHATRDRAFT_50304 Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_50304	chr_28		242862	245520	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0218

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0072	0.33	11 13000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
bHLH-MYC_N superfamily		bHLH-MYC and R2R3-MYB transcription factors N-terminal; This is the N-terminal region of a family...	-	47.2685	1.71E-06	407 - 478	superfamily	258408
RING		Ring finger; E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is...	cl17238	35.1774	0.00804114	32 - 70	specific	214546
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	35.1774	0.00804114	32 - 70	superfamily	266579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
10465		Not available	253465	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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